X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.327616% PEG 4000, 0.04 M HEPES, 0.08 M calcium acetate, 0.03 M DTT, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 276K
Crystal Properties
Matthews coefficientSolvent content
2.3447.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.293α = 90
b = 67.616β = 115.04
c = 54.396γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.00APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.45093.30.02937.14.8656882
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.4587.10.08517.74.76090

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2UV01.4206134332711000.17010.168230.20675RANDOM19.295
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.150.21-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.856
r_dihedral_angle_4_deg13.799
r_dihedral_angle_3_deg13.67
r_dihedral_angle_1_deg5.026
r_sphericity_free4.517
r_scangle_it4.048
r_sphericity_bonded3.471
r_scbond_it3.36
r_rigid_bond_restr2.712
r_mcangle_it1.989
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.856
r_dihedral_angle_4_deg13.799
r_dihedral_angle_3_deg13.67
r_dihedral_angle_1_deg5.026
r_sphericity_free4.517
r_scangle_it4.048
r_sphericity_bonded3.471
r_scbond_it3.36
r_rigid_bond_restr2.712
r_mcangle_it1.989
r_angle_refined_deg1.394
r_mcbond_it1.335
r_nbtor_refined0.313
r_symmetry_vdw_refined0.306
r_nbd_refined0.218
r_symmetry_hbond_refined0.165
r_xyhbond_nbd_refined0.146
r_chiral_restr0.086
r_bond_refined_d0.01
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2586
Nucleic Acid Atoms
Solvent Atoms457
Heterogen Atoms42

Software

Software
Software NamePurpose
MAR345dtbdata collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling