3ILG

Crystal structure of humnan insulin Sr+2 complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.82930.1M Sodium Citrate, 1M Ammonium Sulphate, 0.1M Strontium Chloride, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
1.8433.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.298α = 90
b = 81.298β = 90
c = 33.734γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plateMirror2008-12-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.930990.06720.05738.15.36573624336.08
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.971000.17450.16432.55.26573

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1MSO1.916.96573624330399.760.195290.191540.27804RANDOM25.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.158
r_dihedral_angle_3_deg16.525
r_dihedral_angle_1_deg6.7
r_scangle_it4.638
r_scbond_it3.291
r_mcangle_it2.275
r_angle_refined_deg1.67
r_mcbond_it1.243
r_dihedral_angle_4_deg1.056
r_metal_ion_refined0.396
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.158
r_dihedral_angle_3_deg16.525
r_dihedral_angle_1_deg6.7
r_scangle_it4.638
r_scbond_it3.291
r_mcangle_it2.275
r_angle_refined_deg1.67
r_mcbond_it1.243
r_dihedral_angle_4_deg1.056
r_metal_ion_refined0.396
r_symmetry_hbond_refined0.396
r_symmetry_metal_ion_refined0.395
r_symmetry_vdw_refined0.372
r_nbtor_refined0.307
r_nbd_refined0.245
r_xyhbond_nbd_refined0.244
r_chiral_restr0.102
r_bond_refined_d0.019
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms810
Nucleic Acid Atoms
Solvent Atoms57
Heterogen Atoms2

Software

Software
Software NamePurpose
MAR345dtbdata collection
AMoREphasing
REFMACrefinement
AUTOMARdata reduction