X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP27730% W/V PEG 2K MME, 0.1M KSCN, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.1643.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.86α = 90
b = 67.129β = 90
c = 56.196γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MIRROR2007-06-16MMOLECULAR REPLACEMENT
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9794APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35099.60.0860.08629.6765.898539853-350.58
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3899.70.430.433.46945

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1Z772.3509821982147399.680.2150.2150.2120.273RANDOM39.21
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.931.021.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.538
r_dihedral_angle_4_deg17.496
r_dihedral_angle_3_deg15.76
r_dihedral_angle_1_deg5.472
r_scangle_it3.514
r_scbond_it2.526
r_mcangle_it1.406
r_angle_refined_deg1.367
r_mcbond_it1.239
r_angle_other_deg0.925
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.538
r_dihedral_angle_4_deg17.496
r_dihedral_angle_3_deg15.76
r_dihedral_angle_1_deg5.472
r_scangle_it3.514
r_scbond_it2.526
r_mcangle_it1.406
r_angle_refined_deg1.367
r_mcbond_it1.239
r_angle_other_deg0.925
r_nbd_refined0.217
r_mcbond_other0.203
r_nbtor_refined0.188
r_symmetry_vdw_refined0.177
r_nbd_other0.173
r_symmetry_vdw_other0.17
r_xyhbond_nbd_refined0.163
r_symmetry_hbond_refined0.163
r_nbtor_other0.088
r_chiral_restr0.08
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1660
Nucleic Acid Atoms
Solvent Atoms44
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
HKL-3000phasing
REFMACrefinement
Cootmodel building
HKL-2000data reduction
HKL-2000data scaling