3I0T

Sulfur-SAD at long wavelength: Structure of BH3703 from Bacillus halodurans


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5298(NH4)2SO4 2.0 M, Tris pH 7.5, LiSO4 0.2M, Vapor diffusion, Sitting drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0659.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.469α = 90
b = 81.474β = 90
c = 92.071γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2006-08-26SAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID2.26864APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2733.0399.10.05937.3546.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.272.3590.90.19764357

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.2733.0325268128999.590.2050.2030.238RANDOM34.371
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.32-2.031.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.196
r_dihedral_angle_3_deg14.38
r_dihedral_angle_4_deg7.993
r_dihedral_angle_1_deg5.886
r_scangle_it3.851
r_scbond_it2.365
r_mcangle_it1.741
r_angle_refined_deg1.291
r_mcbond_it0.892
r_chiral_restr0.102
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.196
r_dihedral_angle_3_deg14.38
r_dihedral_angle_4_deg7.993
r_dihedral_angle_1_deg5.886
r_scangle_it3.851
r_scbond_it2.365
r_mcangle_it1.741
r_angle_refined_deg1.291
r_mcbond_it0.892
r_chiral_restr0.102
r_bond_refined_d0.014
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3011
Nucleic Acid Atoms
Solvent Atoms189
Heterogen Atoms5

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection
HKL-2000data reduction
SHELXDphasing
SHELXEmodel building