3I00

Crystal Structure of the huntingtin interacting protein 1 coiled coil domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1sitting drop vapor diffusion6.529850mM MES pH 6.5, 17.5% PEG 6000, sitting drop vapor diffusion, temperature 298K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.801α = 90
b = 57.092β = 90
c = 81.161γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 315SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.340.5999.20.03332.7843.97765
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3896.80.1763.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.340.59733139499.080.237090.234620.28038RANDOM50.344
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.180.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.803
r_dihedral_angle_3_deg21.259
r_dihedral_angle_4_deg20.034
r_dihedral_angle_1_deg7.433
r_scangle_it2.772
r_mcangle_it1.977
r_scbond_it1.821
r_angle_refined_deg1.361
r_mcbond_it1.23
r_nbtor_refined0.283
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.803
r_dihedral_angle_3_deg21.259
r_dihedral_angle_4_deg20.034
r_dihedral_angle_1_deg7.433
r_scangle_it2.772
r_mcangle_it1.977
r_scbond_it1.821
r_angle_refined_deg1.361
r_mcbond_it1.23
r_nbtor_refined0.283
r_symmetry_hbond_refined0.255
r_symmetry_vdw_refined0.238
r_xyhbond_nbd_refined0.217
r_nbd_refined0.197
r_chiral_restr0.108
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1281
Nucleic Acid Atoms
Solvent Atoms65
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling