3HQ7

CcpA from G. sulfurreducens, G94K/K97Q/R100I variant


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.6152.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.299α = 89.97
b = 99.353β = 89.98
c = 78.225γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMAR CCD 165 mm2007-03-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X121.05EMBL/DESY, HAMBURGX12

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.37099.60.1461515.2178412

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3HQ62.31701687090699.750.21290.208790.29373RANDOM39.489
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.870.87-1.75
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.626
r_dihedral_angle_3_deg21.2
r_dihedral_angle_4_deg20.764
r_dihedral_angle_1_deg9.179
r_scangle_it5.172
r_scbond_it3.699
r_angle_refined_deg2.783
r_mcangle_it2.438
r_mcbond_it1.513
r_metal_ion_refined0.335
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.626
r_dihedral_angle_3_deg21.2
r_dihedral_angle_4_deg20.764
r_dihedral_angle_1_deg9.179
r_scangle_it5.172
r_scbond_it3.699
r_angle_refined_deg2.783
r_mcangle_it2.438
r_mcbond_it1.513
r_metal_ion_refined0.335
r_nbtor_refined0.32
r_nbd_refined0.285
r_xyhbond_nbd_refined0.25
r_symmetry_vdw_refined0.23
r_chiral_restr0.174
r_symmetry_hbond_refined0.122
r_bond_refined_d0.032
r_gen_planes_refined0.012
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2287
Nucleic Acid Atoms
Solvent Atoms183
Heterogen Atoms87

Software

Software
Software NamePurpose
REFMACrefinement