3HOS

Crystal structure of the mariner Mos1 paired end complex with Mg


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
5.116875.9616

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.232α = 90
b = 85.033β = 98.93
c = 131.273γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATEMAR scanner 345 mm plate2006-09-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.9535ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.53098.80.179.53.9331493314911
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.53.7990.6652.53.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2F7T3.529.873249432494164796.710.2220.2220.2190.279RANDOM70.567
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.64-4.043.54-5.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.204
r_mcangle_it33.639
r_mcbond_it28.789
r_dihedral_angle_3_deg19.474
r_dihedral_angle_4_deg16.983
r_scangle_it13.81
r_scbond_it9.835
r_mcbond_other8.489
r_dihedral_angle_1_deg4.109
r_angle_refined_deg1.997
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.204
r_mcangle_it33.639
r_mcbond_it28.789
r_dihedral_angle_3_deg19.474
r_dihedral_angle_4_deg16.983
r_scangle_it13.81
r_scbond_it9.835
r_mcbond_other8.489
r_dihedral_angle_1_deg4.109
r_angle_refined_deg1.997
r_angle_other_deg0.94
r_nbd_other0.307
r_nbd_refined0.294
r_symmetry_vdw_other0.257
r_nbtor_refined0.24
r_xyhbond_nbd_refined0.24
r_symmetry_vdw_refined0.233
r_symmetry_metal_ion_refined0.196
r_symmetry_hbond_refined0.189
r_xyhbond_nbd_other0.13
r_nbtor_other0.101
r_chiral_restr0.091
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5614
Nucleic Acid Atoms3258
Solvent Atoms2
Heterogen Atoms11

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection