3HA8

THE COMPLEX STRUCTURE OF THE MAP KINASE P38/Compound 14b


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.8556.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.222α = 90
b = 87.934β = 90
c = 121.501γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray2008-02-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.485097.2177102

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1BMK2.4825177101568398291.790.216850.214950.2478RANDOM48.544
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.13-1.790.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.265
r_dihedral_angle_4_deg17.086
r_dihedral_angle_3_deg15.202
r_dihedral_angle_1_deg5.112
r_angle_refined_deg1.069
r_scangle_it1.033
r_scbond_it0.632
r_mcangle_it0.591
r_mcbond_it0.325
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.265
r_dihedral_angle_4_deg17.086
r_dihedral_angle_3_deg15.202
r_dihedral_angle_1_deg5.112
r_angle_refined_deg1.069
r_scangle_it1.033
r_scbond_it0.632
r_mcangle_it0.591
r_mcbond_it0.325
r_nbtor_refined0.302
r_symmetry_hbond_refined0.187
r_nbd_refined0.182
r_symmetry_vdw_refined0.141
r_xyhbond_nbd_refined0.124
r_chiral_restr0.066
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2725
Nucleic Acid Atoms
Solvent Atoms49
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement