3H0S

Crystal structure of the carboxyltransferase domain of acetyl-coenzyme A carboxylase in complex with compound 7


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5.52980.1 M Na citrate ,pH 5.5, 200 mM NaCl, 8% PEG8000, 10% glycerol, vapor diffusion, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
4.1870.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 246.716α = 90
b = 121.678β = 94.23
c = 145.991γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKU RAXIS HTC2006-01-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4340.798.30.06521.1123.5159230
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.432.5291.90.6143.414879

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1W2X2.4340.71592031582998.480.1660.160.218RANDOM56.371
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.71-0.242.86-1.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38
r_dihedral_angle_3_deg19.642
r_dihedral_angle_4_deg18.672
r_dihedral_angle_1_deg7.798
r_scangle_it3.718
r_scbond_it2.475
r_angle_refined_deg1.993
r_mcangle_it1.938
r_mcbond_it1.302
r_angle_other_deg1.035
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38
r_dihedral_angle_3_deg19.642
r_dihedral_angle_4_deg18.672
r_dihedral_angle_1_deg7.798
r_scangle_it3.718
r_scbond_it2.475
r_angle_refined_deg1.993
r_mcangle_it1.938
r_mcbond_it1.302
r_angle_other_deg1.035
r_symmetry_hbond_refined0.361
r_xyhbond_nbd_refined0.275
r_symmetry_vdw_other0.254
r_mcbond_other0.241
r_nbd_refined0.232
r_nbd_other0.21
r_nbtor_refined0.188
r_xyhbond_nbd_other0.18
r_symmetry_vdw_refined0.167
r_chiral_restr0.128
r_nbtor_other0.096
r_bond_refined_d0.024
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16257
Nucleic Acid Atoms
Solvent Atoms2403
Heterogen Atoms110

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data scaling