X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72851.5M DL-malic, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 285K
Crystal Properties
Matthews coefficientSolvent content
6.29380480.45697

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 262.498α = 90
b = 262.498β = 90
c = 262.498γ = 90
Symmetry
Space GroupF 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X12C0.9792, 0.9790, 0.9600NSLSX12C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.1501000.10328.6841814605
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
3.13.211000.38918.31401

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT3.1201443472199.50.2170.2150.26RANDOM44.126
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.711
r_dihedral_angle_4_deg22.285
r_dihedral_angle_3_deg21.97
r_dihedral_angle_1_deg7.669
r_scangle_it3.323
r_scbond_it2.196
r_angle_refined_deg1.742
r_mcangle_it1.612
r_mcbond_it1.103
r_nbtor_refined0.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.711
r_dihedral_angle_4_deg22.285
r_dihedral_angle_3_deg21.97
r_dihedral_angle_1_deg7.669
r_scangle_it3.323
r_scbond_it2.196
r_angle_refined_deg1.742
r_mcangle_it1.612
r_mcbond_it1.103
r_nbtor_refined0.32
r_symmetry_hbond_refined0.264
r_nbd_refined0.252
r_symmetry_vdw_refined0.174
r_xyhbond_nbd_refined0.134
r_chiral_restr0.111
r_bond_refined_d0.014
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1750
Nucleic Acid Atoms
Solvent Atoms28
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction