Experiment: 3GRL

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	293	1.2 M NaH2PO4/K2HPO4, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
4.25	71.06

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 155.629	α = 90
b = 174.715	β = 90
c = 87.511	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	77				2005-12-08	M	SINGLE WAVELENGTH
2	1	x-ray	77	M	MAD
1,2	1

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL9-2	1.00	SSRL	BL9-2
2	SYNCHROTRON	ALS BEAMLINE 8.2.1	0.9794, 0.9796, 0.9537	ALS	8.2.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2	2	50	98.7	0.049	34.3			79589		2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1,2	2	2.03	94.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		THROUGHOUT	2	48.41	71158	7124	88	0.181	0.178	0.204	RANDOM	35.891

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.35			2.44		-0.09

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.015
r_dihedral_angle_4_deg	18.332
r_dihedral_angle_3_deg	14.746
r_scangle_it	6.945
r_dihedral_angle_1_deg	5.129
r_scbond_it	4.723
r_mcangle_it	2.802
r_mcbond_it	1.592
r_angle_refined_deg	1.246
r_angle_other_deg	0.922

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.015
r_dihedral_angle_4_deg	18.332
r_dihedral_angle_3_deg	14.746
r_scangle_it	6.945
r_dihedral_angle_1_deg	5.129
r_scbond_it	4.723
r_mcangle_it	2.802
r_mcbond_it	1.592
r_angle_refined_deg	1.246
r_angle_other_deg	0.922
r_mcbond_other	0.412
r_chiral_restr	0.073
r_bond_refined_d	0.012
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4690
Nucleic Acid Atoms
Solvent Atoms	390
Heterogen Atoms	5

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.