3G1O

EthR from Mycobacterium tuberculosis in complex with compound BDM14500


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52930.17 M ammonium sulfate, 0.085 M Na-cacodylate (pH 6.5), 15% glycerol, and 25% polyethylene glycol 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2144.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.23α = 90
b = 121.23β = 90
c = 33.68γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8519.421002042820428
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.898100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.8519.42204282042810751000.2110.2110.207660.27666RANDOM21.567
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.110.11-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.339
r_dihedral_angle_3_deg16.247
r_dihedral_angle_4_deg16.071
r_dihedral_angle_1_deg5.407
r_sphericity_free5.181
r_scangle_it3.398
r_sphericity_bonded3.096
r_scbond_it2.398
r_mcangle_it1.78
r_angle_refined_deg1.586
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.339
r_dihedral_angle_3_deg16.247
r_dihedral_angle_4_deg16.071
r_dihedral_angle_1_deg5.407
r_sphericity_free5.181
r_scangle_it3.398
r_sphericity_bonded3.096
r_scbond_it2.398
r_mcangle_it1.78
r_angle_refined_deg1.586
r_rigid_bond_restr1.584
r_mcbond_it1.178
r_symmetry_hbond_refined0.357
r_xyhbond_nbd_refined0.333
r_nbtor_refined0.3
r_nbd_refined0.215
r_symmetry_vdw_refined0.184
r_chiral_restr0.108
r_bond_refined_d0.015
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1510
Nucleic Acid Atoms
Solvent Atoms165
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling