3FPO

HSSNNF segment from Islet Amyloid Polypeptide (IAPP or Amylin)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52988% PEG 8000, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 4.822α = 90
b = 16.391β = 92.5
c = 23.476γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-11-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.9792APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.59093.60.1599.5054.3568568-314
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.51.6275.60.57224.499

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.523.455625392.130.140.1390.154RANDOM5.454
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.4-0.060.88-0.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg57.475
r_dihedral_angle_3_deg5.176
r_dihedral_angle_1_deg3.153
r_mcangle_it1.596
r_scbond_it1.065
r_scangle_it1.049
r_mcbond_it0.888
r_angle_refined_deg0.703
r_angle_other_deg0.535
r_nbd_other0.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg57.475
r_dihedral_angle_3_deg5.176
r_dihedral_angle_1_deg3.153
r_mcangle_it1.596
r_scbond_it1.065
r_scangle_it1.049
r_mcbond_it0.888
r_angle_refined_deg0.703
r_angle_other_deg0.535
r_nbd_other0.2
r_symmetry_vdw_other0.184
r_nbtor_refined0.171
r_nbd_refined0.146
r_mcbond_other0.142
r_symmetry_vdw_refined0.12
r_chiral_restr0.076
r_nbtor_other0.07
r_symmetry_hbond_refined0.066
r_bond_refined_d0.004
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms50
Nucleic Acid Atoms
Solvent Atoms4
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction