3FPJ

Crystal Structure of E81Q mutant of MtNAS in complex with S-ADENOSYLMETHIONINE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829422% PEG 3350, 400mM NaBr, pH 8, vapor diffusion, hanging drop, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.4349.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.6α = 90
b = 68.98β = 90
c = 147.39γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2008-09-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.93300ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.829.80199.80.0770.0775.954.76183461711
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.91000.3760.3761.94.88937

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3FPE1.829.861502308299.430.2280.2250.284RANDOM14.14
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.380.6-0.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.453
r_dihedral_angle_4_deg18.984
r_dihedral_angle_3_deg17.597
r_dihedral_angle_1_deg10.467
r_scangle_it4.915
r_scbond_it3.561
r_angle_refined_deg2.506
r_mcangle_it1.865
r_mcbond_it1.375
r_nbtor_refined0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.453
r_dihedral_angle_4_deg18.984
r_dihedral_angle_3_deg17.597
r_dihedral_angle_1_deg10.467
r_scangle_it4.915
r_scbond_it3.561
r_angle_refined_deg2.506
r_mcangle_it1.865
r_mcbond_it1.375
r_nbtor_refined0.312
r_nbd_refined0.252
r_symmetry_hbond_refined0.235
r_xyhbond_nbd_refined0.229
r_symmetry_vdw_refined0.22
r_chiral_restr0.18
r_bond_refined_d0.027
r_gen_planes_refined0.012
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4164
Nucleic Acid Atoms
Solvent Atoms540
Heterogen Atoms76

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction