X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62946% PEG 8000, MES, PH 6.0, 200MM SODIU ACYTATE,10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties
Matthews coefficientSolvent content
2.7555.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.208α = 81.75
b = 108.048β = 80.36
c = 171.132γ = 74.4
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2007-03-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-IDAPS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6150980.2063.23.1227280-0.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.612.797.10.7612.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMRTHROUGHOUT2R8C2.6320212060658196.430.239020.237690.28148RANDOM58.115
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.77-0.931.96-0.460.09-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.777
r_dihedral_angle_3_deg22.156
r_dihedral_angle_4_deg18.905
r_scangle_it12.458
r_scbond_it8.363
r_dihedral_angle_1_deg8.23
r_mcangle_it7.036
r_mcbond_it4.703
r_angle_refined_deg1.08
r_symmetry_hbond_refined0.494
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.777
r_dihedral_angle_3_deg22.156
r_dihedral_angle_4_deg18.905
r_scangle_it12.458
r_scbond_it8.363
r_dihedral_angle_1_deg8.23
r_mcangle_it7.036
r_mcbond_it4.703
r_angle_refined_deg1.08
r_symmetry_hbond_refined0.494
r_symmetry_vdw_refined0.353
r_nbtor_refined0.318
r_nbd_refined0.196
r_xyhbond_nbd_refined0.19
r_chiral_restr0.088
r_metal_ion_refined0.045
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms48085
Nucleic Acid Atoms
Solvent Atoms145
Heterogen Atoms32

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling