X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82981.6 M Potassium Phosphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.9958.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.47α = 90
b = 83.47β = 90
c = 215.45γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6MSILICON OPTICS2007-08-19MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0,1.7368SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.84098.40.0754.578209782092235.16
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.91960.3512.53.110654

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.815227812274151389898.060.20.2010.198980.23823RANDOM35.156
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.340.170.34-0.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.375
r_dihedral_angle_4_deg20.569
r_dihedral_angle_3_deg19.619
r_dihedral_angle_1_deg5.729
r_scangle_it4.377
r_scbond_it2.727
r_angle_refined_deg1.784
r_mcangle_it1.468
r_mcbond_it0.946
r_chiral_restr0.354
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.375
r_dihedral_angle_4_deg20.569
r_dihedral_angle_3_deg19.619
r_dihedral_angle_1_deg5.729
r_scangle_it4.377
r_scbond_it2.727
r_angle_refined_deg1.784
r_mcangle_it1.468
r_mcbond_it0.946
r_chiral_restr0.354
r_nbtor_refined0.31
r_symmetry_vdw_refined0.275
r_nbd_refined0.205
r_symmetry_hbond_refined0.177
r_xyhbond_nbd_refined0.159
r_bond_refined_d0.015
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4780
Nucleic Acid Atoms
Solvent Atoms428
Heterogen Atoms72

Software

Software
Software NamePurpose
XDSdata scaling
SHARPphasing
REFMACrefinement
XDSdata reduction