3EX9

Crystal structure of PhzA/B from Burkholderia cepacia R18194 crystallized in C2221


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.22840.1M Bis-TRIS, 0.2M NH4OAc, 20% (w/v) PEG 3350, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 284K
Crystal Properties
Matthews coefficientSolvent content
2.3547.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.94α = 90
b = 79.68β = 90
c = 64.24γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2008-07-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.0SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.242.2697.40.06420.19.210609103385.548
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.395.70.4295.58.61305

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3B4O2.220980353597.450.194760.192180.23968RANDOM54.538
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.843.08-1.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.708
r_dihedral_angle_4_deg20.307
r_dihedral_angle_3_deg18.399
r_dihedral_angle_1_deg7.534
r_scangle_it3.958
r_scbond_it2.563
r_angle_refined_deg1.831
r_mcangle_it1.632
r_mcbond_it1.097
r_angle_other_deg0.966
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.708
r_dihedral_angle_4_deg20.307
r_dihedral_angle_3_deg18.399
r_dihedral_angle_1_deg7.534
r_scangle_it3.958
r_scbond_it2.563
r_angle_refined_deg1.831
r_mcangle_it1.632
r_mcbond_it1.097
r_angle_other_deg0.966
r_symmetry_vdw_other0.314
r_mcbond_other0.265
r_nbd_other0.216
r_nbd_refined0.211
r_xyhbond_nbd_refined0.193
r_symmetry_vdw_refined0.193
r_nbtor_refined0.191
r_symmetry_hbond_refined0.182
r_chiral_restr0.116
r_nbtor_other0.095
r_bond_refined_d0.022
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1253
Nucleic Acid Atoms
Solvent Atoms34
Heterogen Atoms

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling