X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52981.6 M MgSO4, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5150.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 221.461α = 90
b = 221.461β = 90
c = 221.461γ = 90
Symmetry
Space GroupF 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2005-01-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9021599.60.0943115.969834-318.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9021.971000.4837.314.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.902156430964309344996.680.18530.18530.184280.20396RANDOM16.959
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.995
r_dihedral_angle_3_deg13.411
r_dihedral_angle_4_deg11.987
r_dihedral_angle_1_deg6.268
r_scangle_it1.811
r_scbond_it1.175
r_angle_refined_deg1.108
r_mcangle_it0.924
r_mcbond_it0.513
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.995
r_dihedral_angle_3_deg13.411
r_dihedral_angle_4_deg11.987
r_dihedral_angle_1_deg6.268
r_scangle_it1.811
r_scbond_it1.175
r_angle_refined_deg1.108
r_mcangle_it0.924
r_mcbond_it0.513
r_nbtor_refined0.309
r_symmetry_vdw_refined0.189
r_nbd_refined0.178
r_symmetry_hbond_refined0.162
r_xyhbond_nbd_refined0.127
r_chiral_restr0.075
r_metal_ion_refined0.018
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6396
Nucleic Acid Atoms
Solvent Atoms851
Heterogen Atoms127

Software

Software
Software NamePurpose
MAR345dtbdata collection
SOLVEphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling