Experiment: 3EFW

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	4.6	273	0.1 M Sodium Acetate, 0.4 M Ammonium Sulfate, 15% PEG 4000, pH 4.6, VAPOR DIFFUSION, temperature 273K

Crystal Properties
Matthews coefficient	Solvent content
2.27	45.76

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 118.511	α = 90
b = 125.448	β = 90
c = 75.752	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	130	IMAGE PLATE	RIGAKU RAXIS IV++	osmic	2004-05-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E SUPERBRIGHT	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.29	50	89.8	0.062	21.1	3.6	24589	22081	-3	-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.29	2.41	60.6		0.316	3.4	3.4	1453

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.29	29.63	24339	20740	1110	85.21	0.26001	0.26001	0.25808	0.29467	RANDOM	35.15

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.37			-1.36		2.73

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.058
r_dihedral_angle_4_deg	16.341
r_dihedral_angle_3_deg	15.007
r_dihedral_angle_1_deg	4.607
r_scangle_it	1.336
r_angle_refined_deg	1.018
r_scbond_it	0.854
r_mcangle_it	0.784
r_mcbond_it	0.432
r_nbtor_refined	0.298

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.058
r_dihedral_angle_4_deg	16.341
r_dihedral_angle_3_deg	15.007
r_dihedral_angle_1_deg	4.607
r_scangle_it	1.336
r_angle_refined_deg	1.018
r_scbond_it	0.854
r_mcangle_it	0.784
r_mcbond_it	0.432
r_nbtor_refined	0.298
r_symmetry_hbond_refined	0.225
r_symmetry_vdw_refined	0.183
r_nbd_refined	0.175
r_xyhbond_nbd_refined	0.131
r_chiral_restr	0.059
r_bond_refined_d	0.007
r_gen_planes_refined	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3846
Nucleic Acid Atoms
Solvent Atoms	60
Heterogen Atoms	82

Software

Software
Software Name	Purpose
CrystalClear	data collection
AMoRE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.