3E7R

X-ray Crystal Structure of Racemic Plectasin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
172920.1 M HEPES, 22.5% (w/v) Jeffamine ED-2001, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
1.4114.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 23.581α = 109.65
b = 23.812β = 94.95
c = 24.492γ = 97.69
Symmetry
Space GroupP -1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2007-10-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-DAPS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
115083.20.068123.522253
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
111.04320.2124.82.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGTHROUGHOUT122.8421051110083.20.2030.2020.224RANDOM11.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.110.080.03-0.03-0.05-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.391
r_dihedral_angle_3_deg16.544
r_sphericity_free12.1
r_sphericity_bonded7.042
r_dihedral_angle_1_deg6.453
r_scangle_it5.873
r_scbond_it4.246
r_mcangle_it2.825
r_rigid_bond_restr2.23
r_mcbond_it1.927
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.391
r_dihedral_angle_3_deg16.544
r_sphericity_free12.1
r_sphericity_bonded7.042
r_dihedral_angle_1_deg6.453
r_scangle_it5.873
r_scbond_it4.246
r_mcangle_it2.825
r_rigid_bond_restr2.23
r_mcbond_it1.927
r_angle_refined_deg1.749
r_nbtor_refined0.323
r_symmetry_vdw_refined0.209
r_nbd_refined0.192
r_symmetry_hbond_refined0.133
r_chiral_restr0.09
r_xyhbond_nbd_refined0.069
r_bond_refined_d0.02
r_gen_planes_refined0.014
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms302
Nucleic Acid Atoms
Solvent Atoms24
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
SHELXSphasing