X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5277200mM sodium chloride, 100mM sodium acetate, 20% PEG 6000, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4549.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.141α = 90
b = 117.17β = 94.65
c = 84.876γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8319.210.0747.59902988661

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8319.218866188661466697.090.184670.182440.22664RANDOM21.702
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.06-0.39-0.02-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.449
r_dihedral_angle_3_deg13.911
r_dihedral_angle_4_deg12.436
r_dihedral_angle_1_deg6.045
r_scangle_it4.286
r_scbond_it2.92
r_angle_refined_deg1.903
r_mcangle_it1.654
r_angle_other_deg1.074
r_mcbond_it1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.449
r_dihedral_angle_3_deg13.911
r_dihedral_angle_4_deg12.436
r_dihedral_angle_1_deg6.045
r_scangle_it4.286
r_scbond_it2.92
r_angle_refined_deg1.903
r_mcangle_it1.654
r_angle_other_deg1.074
r_mcbond_it1
r_mcbond_other0.354
r_symmetry_vdw_other0.321
r_symmetry_vdw_refined0.259
r_nbd_refined0.221
r_nbd_other0.193
r_symmetry_hbond_refined0.181
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.179
r_chiral_restr0.111
r_nbtor_other0.086
r_xyhbond_nbd_other0.04
r_bond_refined_d0.023
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.002
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6954
Nucleic Acid Atoms
Solvent Atoms804
Heterogen Atoms76

Software

Software
Software NamePurpose
REFMACrefinement