3CZT

Crystal Structure of S100B in the Calcium and Zinc Loaded State at pH 9


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP92910.02 M TAPS, pH 9.0, 30% PEG4000, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.1743.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.98α = 90
b = 89.26β = 90
c = 59.58γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2004-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.91853SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.417.8970.05218.4218236-321.159
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.5589.40.2135.12.94340

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1MHO1.417.8182319111000.1640.1620.222RANDOM13.039
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.040.05-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.699
r_dihedral_angle_3_deg12.595
r_dihedral_angle_4_deg12.336
r_sphericity_free8.446
r_scangle_it5.199
r_dihedral_angle_1_deg4.54
r_scbond_it4.066
r_sphericity_bonded4.015
r_rigid_bond_restr2.49
r_mcangle_it2.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.699
r_dihedral_angle_3_deg12.595
r_dihedral_angle_4_deg12.336
r_sphericity_free8.446
r_scangle_it5.199
r_dihedral_angle_1_deg4.54
r_scbond_it4.066
r_sphericity_bonded4.015
r_rigid_bond_restr2.49
r_mcangle_it2.43
r_mcbond_it1.733
r_angle_refined_deg1.485
r_angle_other_deg1.313
r_mcbond_other0.773
r_chiral_restr0.104
r_bond_refined_d0.019
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms739
Nucleic Acid Atoms
Solvent Atoms181
Heterogen Atoms4

Software

Software
Software NamePurpose
XSCALEdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction