3CXV

Crystal structure of the Cytochrome P450 CYP121 A233G mutant from Mycobacterium tuberculosis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72782.0 M ammonium sulphate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
2.6152.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.129α = 90
b = 77.129β = 90
c = 263.34γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102006-01-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.96ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.76699.730.05649363

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1N401.766.824936349363265599.730.166910.166910.165620.19063RANDOM9.649
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.140.070.14-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.774
r_dihedral_angle_4_deg14.553
r_dihedral_angle_3_deg12.309
r_dihedral_angle_1_deg5.269
r_scangle_it2.582
r_angle_other_deg1.713
r_scbond_it1.666
r_angle_refined_deg1.356
r_mcangle_it1.059
r_mcbond_it0.694
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.774
r_dihedral_angle_4_deg14.553
r_dihedral_angle_3_deg12.309
r_dihedral_angle_1_deg5.269
r_scangle_it2.582
r_angle_other_deg1.713
r_scbond_it1.666
r_angle_refined_deg1.356
r_mcangle_it1.059
r_mcbond_it0.694
r_symmetry_vdw_other0.226
r_nbd_refined0.223
r_nbd_other0.19
r_symmetry_hbond_refined0.175
r_mcbond_other0.174
r_nbtor_refined0.171
r_xyhbond_nbd_refined0.129
r_symmetry_vdw_refined0.117
r_nbtor_other0.086
r_chiral_restr0.076
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3077
Nucleic Acid Atoms
Solvent Atoms450
Heterogen Atoms101

Software

Software
Software NamePurpose
REFMACrefinement
DNAdata collection
MOSFLMdata reduction
SCALAdata scaling
REFMACphasing