3CHR

Crystal structure of leukotriene A4 hydrolase in complex with 4-amino-N-[4-(phenylmethoxy)phenyl]-butanamide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1LIQUID DIFFUSION8298PEG 8000, SODIUM ACETATE, IMIDEAZOLE PH 6.8, YBCL2, BESTATIN, LIQUID DIFFUSION, TEMPERATURE 298K, pH 8.00
Crystal Properties
Matthews coefficientSolvent content
2.6954.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.346α = 90
b = 133.21β = 90
c = 83.1γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2003-02-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7111.091MAX III711

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.217.6899.60.0716.94.138521
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.321000.32823.95572

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT2.217.6236768170499.590.209480.206820.26694RANDOM36.305
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.221.15-0.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.501
r_scangle_it2.773
r_scbond_it1.726
r_angle_refined_deg1.405
r_mcangle_it1.293
r_angle_other_deg0.851
r_mcbond_it0.711
r_symmetry_vdw_refined0.385
r_symmetry_hbond_refined0.375
r_symmetry_vdw_other0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.501
r_scangle_it2.773
r_scbond_it1.726
r_angle_refined_deg1.405
r_mcangle_it1.293
r_angle_other_deg0.851
r_mcbond_it0.711
r_symmetry_vdw_refined0.385
r_symmetry_hbond_refined0.375
r_symmetry_vdw_other0.25
r_nbd_other0.231
r_nbd_refined0.213
r_xyhbond_nbd_refined0.205
r_metal_ion_refined0.124
r_nbtor_other0.085
r_chiral_restr0.083
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_gen_planes_other0.005
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4877
Nucleic Acid Atoms
Solvent Atoms360
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
CNXrefinement
MAR345dtbdata collection
MOSFLMdata reduction
SCALAdata scaling