3C6B

Reaction product of paraoxon and S-formylglutathione hydrolase W197I mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62900.085M Sodium Acetate trihydrate pH 4.6, 0.17M Ammonium Acetate, 25.5% w/v PEG 4000, 15% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.3146.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.902α = 90
b = 68.99β = 92.58
c = 78.993γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDBRUKER SMART 6000Multilayer Mirrors2007-07-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5911.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1778.9197.80.08611.135.05165441618833
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.172.2682.82.322.35

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY ID 1pv12.1778.811536182597.850.193230.190030.25169RANDOM12.74
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.50.250.10.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.433
r_dihedral_angle_4_deg19.969
r_dihedral_angle_3_deg17.134
r_dihedral_angle_1_deg13.968
r_scangle_it3.838
r_scbond_it2.746
r_angle_refined_deg2.059
r_mcangle_it1.695
r_mcbond_it1.072
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.433
r_dihedral_angle_4_deg19.969
r_dihedral_angle_3_deg17.134
r_dihedral_angle_1_deg13.968
r_scangle_it3.838
r_scbond_it2.746
r_angle_refined_deg2.059
r_mcangle_it1.695
r_mcbond_it1.072
r_nbtor_refined0.307
r_symmetry_vdw_refined0.214
r_nbd_refined0.207
r_chiral_restr0.165
r_symmetry_hbond_refined0.134
r_xyhbond_nbd_refined0.116
r_bond_refined_d0.024
r_gen_planes_refined0.009
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2342
Nucleic Acid Atoms
Solvent Atoms40
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PROTEUM PLUSdata collection
SAINTdata reduction
PROTEUM PLUSdata scaling
AMoREphasing