X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.527710% PEG 2,000, 100mM Na MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.7755.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.907α = 90
b = 62.402β = 121.62
c = 76.354γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVVARIMAX-HR confocal optic2008-01-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.025095.530381
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.022.0981

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.0233.862820528205216895.340.245990.242820.28849RANDOM34.276
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.12-0.134.13-2.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.893
r_dihedral_angle_3_deg19.795
r_dihedral_angle_4_deg15.1
r_dihedral_angle_1_deg6.509
r_scangle_it3.052
r_scbond_it2.028
r_angle_refined_deg1.536
r_mcangle_it1.435
r_mcbond_it0.877
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.893
r_dihedral_angle_3_deg19.795
r_dihedral_angle_4_deg15.1
r_dihedral_angle_1_deg6.509
r_scangle_it3.052
r_scbond_it2.028
r_angle_refined_deg1.536
r_mcangle_it1.435
r_mcbond_it0.877
r_nbtor_refined0.307
r_nbd_refined0.214
r_xyhbond_nbd_refined0.188
r_symmetry_hbond_refined0.144
r_symmetry_vdw_refined0.119
r_chiral_restr0.112
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2907
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata collection
HKL-2000data reduction
SCALEPACKdata scaling
REFMACphasing