3C2A

Antibody Fab fragment 447-52D in complex with UG1033 peptide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.92981.58M ammonium sulfate 0.1M Tris 1mM CuCl2, pH 7.9, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0659.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.251α = 90
b = 76.482β = 101.49
c = 114.13γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152002-08-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-1SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15085.70.08427.15.16058660586-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.15860.44544.53035

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1q1j2.1505801458014139585.660.24130.240.29775RANDOM37.165
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.780.310.95-1.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.686
r_dihedral_angle_4_deg21.999
r_dihedral_angle_3_deg17.885
r_dihedral_angle_1_deg7.267
r_scangle_it2.816
r_scbond_it1.976
r_angle_refined_deg1.637
r_mcangle_it1.309
r_mcbond_it0.798
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.686
r_dihedral_angle_4_deg21.999
r_dihedral_angle_3_deg17.885
r_dihedral_angle_1_deg7.267
r_scangle_it2.816
r_scbond_it1.976
r_angle_refined_deg1.637
r_mcangle_it1.309
r_mcbond_it0.798
r_nbtor_refined0.307
r_symmetry_vdw_refined0.252
r_nbd_refined0.217
r_xyhbond_nbd_refined0.166
r_chiral_restr0.109
r_symmetry_hbond_refined0.091
r_bond_refined_d0.017
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6884
Nucleic Acid Atoms
Solvent Atoms187
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
DENZOdata reduction
SCALEPACKdata scaling