X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.22932.2M Ammonium Sulfate, 0.1M sodium citrate, , pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0239.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.141α = 90
b = 34.158β = 107.3
c = 48.604γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-5A1Photon FactoryBL-5A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.765098.91717416985

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.7627.83169851644254098.740.185150.185150.183290.24757RANDOM5.651
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.110.060.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.803
r_dihedral_angle_3_deg12.834
r_dihedral_angle_4_deg7.208
r_dihedral_angle_1_deg6.509
r_scangle_it3.015
r_scbond_it1.844
r_angle_refined_deg1.58
r_mcangle_it0.985
r_mcbond_it0.566
r_symmetry_hbond_refined0.464
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.803
r_dihedral_angle_3_deg12.834
r_dihedral_angle_4_deg7.208
r_dihedral_angle_1_deg6.509
r_scangle_it3.015
r_scbond_it1.844
r_angle_refined_deg1.58
r_mcangle_it0.985
r_mcbond_it0.566
r_symmetry_hbond_refined0.464
r_nbtor_refined0.307
r_xyhbond_nbd_refined0.252
r_nbd_refined0.221
r_symmetry_vdw_refined0.167
r_chiral_restr0.098
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1484
Nucleic Acid Atoms
Solvent Atoms223
Heterogen Atoms8

Software

Software
Software NamePurpose
ADSCdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling