X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529325% PEG 2000 MME, 0.8M sodium formate, 0.1M tris-HCl pH 7.5,, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8433.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.87α = 90
b = 50.009β = 96.9
c = 107.275γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-10-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-5A1.0Photon FactoryBL-5A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95097.30.05514.13.63566725.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9783.10.2683.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.919.963383317801000.189390.186690.24074RANDOM19.769
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.030.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.522
r_dihedral_angle_4_deg27.738
r_dihedral_angle_3_deg15.204
r_dihedral_angle_1_deg5.976
r_scangle_it4.445
r_scbond_it2.742
r_mcangle_it1.716
r_angle_refined_deg1.689
r_angle_other_deg1.115
r_mcbond_it0.927
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.522
r_dihedral_angle_4_deg27.738
r_dihedral_angle_3_deg15.204
r_dihedral_angle_1_deg5.976
r_scangle_it4.445
r_scbond_it2.742
r_mcangle_it1.716
r_angle_refined_deg1.689
r_angle_other_deg1.115
r_mcbond_it0.927
r_mcbond_other0.25
r_chiral_restr0.098
r_bond_refined_d0.02
r_gen_planes_refined0.008
r_gen_planes_other0.008
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3360
Nucleic Acid Atoms
Solvent Atoms257
Heterogen Atoms

Software

Software
Software NamePurpose
SERGUIdata collection
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling