2MK0
Structure of the PSCD4-domain of the cell wall protein pleuralin-1 from the diatom Cylindrotheca fusiformis
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | HNCA | 0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2 | 95% H2O/5% D2O | 6.5 | 298 | |||
2 | CBCA(CO)NH | 0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2 | 95% H2O/5% D2O | 6.5 | 298 | |||
3 | 1H-15N-HSQC | 0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1 | 95% H2O/5% D2O | 6.5 | 298 | |||
4 | 1H-15N-NOESY HSQC | 0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1 | 95% H2O/5% D2O | 6.5 | 298 | |||
5 | 1H-15N-TOCSY HSQC | 0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1 | 95% H2O/5% D2O | 6.5 | 298 | |||
6 | HNCO | 0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2 | 95% H2O/5% D2O | 6.5 | 298 | |||
7 | HACACO | 0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2 | 95% H2O/5% D2O | 6.5 | 298 | |||
8 | HCCH-TOCSY | 0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2 | 95% H2O/5% D2O | 6.5 | 298 | |||
9 | 2D 1H-1H TOCSY | 0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1 | 95% H2O/5% D2O | 6.5 | 298 | |||
10 | 2D 1H-1H NOESY | 0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1 | 95% H2O/5% D2O | 6.5 | 298 | |||
11 | 3D HBHA(CO)NH | 0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2 | 95% H2O/5% D2O | 6.5 | 298 | |||
12 | 2D 1H-13C HSQC | 0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2 | 95% H2O/5% D2O | 6.5 | 298 | |||
13 | 2D 1H-15N HSQC | 0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1 | 95% H2O/5% D2O | 6.5 | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Structures were refined by using data imputation (. Cano, C., Brunner, Baskaran, K., K. Elsner, R., Munte, C. E. and Kalbitzer, H. R. (2009) Protein structure calculation with data imputation: the use of substitute restraints. J. Biomol. NMR 45, 397-411) and refinement in explicut water (Linge, J.P., Williams, M.A., Spronk, C.A.E.M., Bonvin, A.M.J.J. and Nilges, M. (2003). Refinement of protein structures in explicit solvent. Proteins 50, 496-506). | AUREMOL |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 2000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure has been determined combining experimental restraints (J-couplings, Noe distances, Hydrogen Bonds and RDCs) with dihedral angles obtained with TALOS and with additional substitute restraints (Noes, Hydrogen bonds and dihedral angles) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | peak picking | AUREMOL | 2.4.1 beta | Bruker Biospin |
2 | data analysis | AUREMOL | 2.4.1 beta | Bruker Biospin |
3 | processing | AUREMOL | 2.4.1 beta | Bruker Biospin |
4 | structure solution | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
5 | collection | TopSpin | 3.1 | Bruker Biospin |
6 | processing | TopSpin | 3.1 | Bruker Biospin |
7 | data analysis | TopSpin | 3.1 | Bruker Biospin |
8 | refinement | CNS |