X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829115% acetone, 0.6M Ammonium formate (metal basis), 0.6M sodium citrate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
1.9336.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.465α = 90
b = 82.465β = 90
c = 33.843γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray291IMAGE PLATEMAR scanner 345 mm plate2008-06-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5614.750.10324642479
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.562.644.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2A3G2.5614.75246828399.140.200070.197880.21956RANDOM29.369
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.51
r_dihedral_angle_3_deg17.972
r_dihedral_angle_4_deg6.291
r_dihedral_angle_1_deg5.957
r_scangle_it1.817
r_angle_refined_deg1.227
r_scbond_it1.154
r_mcangle_it1.038
r_mcbond_it0.56
r_xyhbond_nbd_refined0.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.51
r_dihedral_angle_3_deg17.972
r_dihedral_angle_4_deg6.291
r_dihedral_angle_1_deg5.957
r_scangle_it1.817
r_angle_refined_deg1.227
r_scbond_it1.154
r_mcangle_it1.038
r_mcbond_it0.56
r_xyhbond_nbd_refined0.34
r_nbtor_refined0.306
r_nbd_refined0.274
r_symmetry_hbond_refined0.216
r_symmetry_vdw_refined0.206
r_chiral_restr0.087
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_symmetry_metal_ion_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms800
Nucleic Acid Atoms
Solvent Atoms35
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
MAR345dtbdata collection
AUTOMARdata reduction
SCALEPACKdata scaling
AMoREphasing