2Z4D

NMR Structures of Yeast Proteasome Component Rpn13


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1HNCACB, HNCA/HN(CO)CA, HNCO/HN(CA)CO0.4mM Rpn13 U-15N, 13C; U-70% 2H; 20mM phosphate buffer; 50mM NaCl; 4mM DTT; 90% H2O, 10% D2O90% H2O/10% D2O20mM phosphate, 50mM NaCl6.5ambient298
23D_15N-separated_NOESY0.5mM Rpn13 U-15N; U-50% 2H; 20mM phosphate buffer; 50mM NaCl; 4mM DTT; 90% H2O, 10% D2O90% H2O/10% D2O20mM phosphate, 50mM NaCl6.5ambient298
33D_13C-separated_NOESY0.5mM Rpn13 U-13C; 20mM phosphate buffer; 50mM NaCl; 4mM DTT; 100% D2O100% D2O20mM phosphate, 50mM NaCl6.5ambient298
4HCCH-TOCSY0.5mM Rpn13 U-13C; 20mM phosphate buffer; 50mM NaCl; 4mM DTT; 100% D2O100% D2O20mM phosphate, 50mM NaCl6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA800
NMR Refinement
MethodDetailsSoftware
simulated annealingThe structures are based on a total of 1084 restraints, 949 are NOE-derived distance constraints, 79 dihedral angle restraints, 56 distance restraints from hydrogen bonds.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number35
Conformers Submitted Total Number8
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2006Frank Delaglio, Stephan Grzesiek, Guang Zhu, Geerten W. Vuister, John Pfeifer and Ad Bax
2data analysisXEASY1996Tai-he Xia and Christian Bartels
3structure solutionX-PLOR3.851A. T. Brunger
4refinementX-PLOR3.851