X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION29316% PEG 3350, 0.16M Potassium Nitrate, 20% Glycerol, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1141.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.326α = 83.77
b = 51.573β = 90.38
c = 86.698γ = 67.14
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-10-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B11.000SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.525.94114961

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.525.911496161121000.179010.177490.20713RANDOM20.333
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.27-1.65-0.332.03-0.05-1.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.297
r_dihedral_angle_4_deg18.513
r_dihedral_angle_3_deg12.98
r_dihedral_angle_1_deg6.554
r_scangle_it2.594
r_scbond_it1.942
r_angle_refined_deg1.486
r_mcangle_it1.028
r_mcbond_it0.888
r_angle_other_deg0.743
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.297
r_dihedral_angle_4_deg18.513
r_dihedral_angle_3_deg12.98
r_dihedral_angle_1_deg6.554
r_scangle_it2.594
r_scbond_it1.942
r_angle_refined_deg1.486
r_mcangle_it1.028
r_mcbond_it0.888
r_angle_other_deg0.743
r_nbd_refined0.192
r_symmetry_vdw_other0.186
r_symmetry_vdw_refined0.185
r_nbd_other0.181
r_mcbond_other0.18
r_nbtor_refined0.17
r_symmetry_hbond_refined0.117
r_xyhbond_nbd_refined0.116
r_nbtor_other0.083
r_chiral_restr0.074
r_metal_ion_refined0.041
r_symmetry_metal_ion_refined0.037
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6771
Nucleic Acid Atoms
Solvent Atoms655
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement