2XUM

FACTOR INHIBITING HIF (FIH) Q239H MUTANT IN COMPLEX WITH ZN(II), NOG AND ASP-SUBSTRATE PEPTIDE (20-MER)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.51.6M AMMONIUM SULPHATE, 6% PEG400, 0.1M HEPES PH7.5, VAPOR DIFFUSION, SITTING DROP
Crystal Properties
Matthews coefficientSolvent content
3.2262

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.352α = 90
b = 86.352β = 90
c = 144.533γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2010-09-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.274.1299.10.0728.59.226863251.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.28980.882.238.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1H2K2.274.1226863142899.130.202280.201240.22178RANDOM49.924
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.19-1.192.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.338
r_dihedral_angle_3_deg15.122
r_dihedral_angle_4_deg14.467
r_dihedral_angle_1_deg5.264
r_scangle_it1.2
r_angle_refined_deg1.034
r_scbond_it0.792
r_mcangle_it0.449
r_nbtor_refined0.298
r_mcbond_it0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.338
r_dihedral_angle_3_deg15.122
r_dihedral_angle_4_deg14.467
r_dihedral_angle_1_deg5.264
r_scangle_it1.2
r_angle_refined_deg1.034
r_scbond_it0.792
r_mcangle_it0.449
r_nbtor_refined0.298
r_mcbond_it0.26
r_symmetry_vdw_refined0.197
r_nbd_refined0.184
r_symmetry_hbond_refined0.181
r_xyhbond_nbd_refined0.122
r_chiral_restr0.075
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_metal_ion_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2980
Nucleic Acid Atoms
Solvent Atoms154
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
CNSphasing