X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12.75 M AMPO4 PH 5.0, 5% DIAMINOOCTANE
Crystal Properties
Matthews coefficientSolvent content
2.142

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.562α = 90
b = 55.56β = 90
c = 42.176γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2007-10-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I03DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.53591.60.0914.54.874451

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.534.28744529290.990.175650.173830.22756RANDOM15.851
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.011.38-0.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.687
r_dihedral_angle_4_deg17.231
r_dihedral_angle_3_deg12.804
r_dihedral_angle_1_deg4.984
r_scangle_it3.203
r_scbond_it2.117
r_mcangle_it1.181
r_angle_refined_deg1.139
r_mcbond_it0.664
r_nbtor_refined0.316
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.687
r_dihedral_angle_4_deg17.231
r_dihedral_angle_3_deg12.804
r_dihedral_angle_1_deg4.984
r_scangle_it3.203
r_scbond_it2.117
r_mcangle_it1.181
r_angle_refined_deg1.139
r_mcbond_it0.664
r_nbtor_refined0.316
r_symmetry_vdw_refined0.214
r_nbd_refined0.207
r_symmetry_hbond_refined0.149
r_xyhbond_nbd_refined0.136
r_chiral_restr0.074
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms474
Nucleic Acid Atoms
Solvent Atoms86
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement