2WCB

S100A12 complex with zinc in the absence of calcium


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.534% PEG 3350, MME, 0.2M TRI AMMONIUM CITRATE PH 7.0
Crystal Properties
Matthews coefficientSolvent content
3.2161

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.696α = 90
b = 83.743β = 90
c = 155.54γ = 90
Symmetry
Space GroupF 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120CCDMARMOSAIC 225 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM14ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7377.899.60.0817.15.1282752
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.7399.60.721.73.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1E8A1.7377.8526795142999.20.2280.2260.261RANDOM11.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
6.04-2.5-3.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.381
r_dihedral_angle_4_deg30.884
r_dihedral_angle_3_deg14.878
r_dihedral_angle_1_deg5.616
r_scangle_it3.58
r_scbond_it2.425
r_angle_refined_deg1.83
r_mcangle_it1.462
r_angle_other_deg1.114
r_mcbond_it0.965
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.381
r_dihedral_angle_4_deg30.884
r_dihedral_angle_3_deg14.878
r_dihedral_angle_1_deg5.616
r_scangle_it3.58
r_scbond_it2.425
r_angle_refined_deg1.83
r_mcangle_it1.462
r_angle_other_deg1.114
r_mcbond_it0.965
r_chiral_restr0.121
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1462
Nucleic Acid Atoms
Solvent Atoms166
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing