2V4B

Crystal Structure of Human ADAMTS-1 catalytic Domain and Cysteine- Rich Domain (apo-form)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
170.2-0.6M SODIUM ACETATE, 0.05M CADMIUM SULPHATE, 0.1M HEPES PH 7.0, 12-22% GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
2.9658.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.579α = 90
b = 64.396β = 90.91
c = 113.524γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-09-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-1ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4140.2699.90.114.173.64504572
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.111000.481.063.63

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT240.2647875256599.90.2220.220.263RANDOM35.07
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.07-0.061.97-2.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.11
r_dihedral_angle_4_deg19.498
r_dihedral_angle_3_deg14.93
r_dihedral_angle_1_deg5.761
r_scangle_it2.272
r_scbond_it1.4
r_angle_refined_deg1.163
r_mcangle_it1.051
r_angle_other_deg0.8
r_mcbond_it0.562
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.11
r_dihedral_angle_4_deg19.498
r_dihedral_angle_3_deg14.93
r_dihedral_angle_1_deg5.761
r_scangle_it2.272
r_scbond_it1.4
r_angle_refined_deg1.163
r_mcangle_it1.051
r_angle_other_deg0.8
r_mcbond_it0.562
r_nbd_refined0.21
r_symmetry_vdw_other0.207
r_nbd_other0.169
r_nbtor_refined0.167
r_xyhbond_nbd_refined0.163
r_symmetry_vdw_refined0.117
r_nbtor_other0.082
r_chiral_restr0.067
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.003
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4315
Nucleic Acid Atoms
Solvent Atoms214
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing