2RO4

RDC-refined Solution Structure of the N-terminal DNA Recognition Domain of the Bacillus subtilis Transition-state Regulator AbrB


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20mM potassium phosphate, 15mM potassium chloride, 1mM EDTA, 1mM DTT, 0.02% sodium azide90% H2O/10% D2O155.8ambient305
22D 1H-15N IPAP HSQC20mM potassium phosphate, 15mM potassium chloride, 1mM EDTA, 1mM DTT, 0.02% sodium azide90% H2O/10% D2O155.8ambient305
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingThe structures are based on 3090 NOE-derived distance constraints, 48 hydrogen bonds, 140 dihedral angle restraints, and 48 residual dipolar couplings restraintsARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsExperiments to measure residual dipolar couplings were collected and used to refine the previously released structure of AbrBN
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisARIA1.2Linge, O'Donoghue and Nilges
2structure solutionARIA1.2Linge, O'Donoghue and Nilges
3data analysisNMRView5.0Johnson, One Moon Scientific
4data analysisNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5refinementARIA1.2Linge, O'Donoghue and Nilges