2RIS

Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of candida albicans- alternate interpretation


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.2144.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.462α = 90
b = 48.134β = 70.24
c = 40.439γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2003-07-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.542

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.651.524177

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.651.524177120791.980.2060.2040.229RANDOM11.594
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.550.170.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.618
r_dihedral_angle_3_deg13.356
r_dihedral_angle_4_deg8.997
r_dihedral_angle_1_deg5.564
r_scangle_it2.621
r_scbond_it1.655
r_angle_refined_deg1.095
r_mcangle_it0.889
r_symmetry_hbond_refined0.603
r_mcbond_it0.563
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.618
r_dihedral_angle_3_deg13.356
r_dihedral_angle_4_deg8.997
r_dihedral_angle_1_deg5.564
r_scangle_it2.621
r_scbond_it1.655
r_angle_refined_deg1.095
r_mcangle_it0.889
r_symmetry_hbond_refined0.603
r_mcbond_it0.563
r_nbtor_refined0.306
r_nbd_refined0.217
r_symmetry_vdw_refined0.177
r_xyhbond_nbd_refined0.115
r_chiral_restr0.077
r_bond_refined_d0.008
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1527
Nucleic Acid Atoms
Solvent Atoms130
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction