X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION629330% PEG 200, 0.1M MES, 5% PEG 3000, pH 6.0, vapor diffusion, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.9969.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.294α = 90
b = 97.577β = 90
c = 135.451γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCUSTOM-MADESINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97934APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.453099.20.069296.441246
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.452.5498.20.4762.65.54013

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.45304035740357203998.970.2290.2290.2270.27RANDOM54.491
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.461.06-5.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.303
r_dihedral_angle_4_deg19.267
r_dihedral_angle_3_deg18.4
r_dihedral_angle_1_deg6.51
r_scangle_it3.056
r_scbond_it2.016
r_angle_refined_deg1.521
r_mcangle_it1.302
r_mcbond_it1.113
r_angle_other_deg0.984
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.303
r_dihedral_angle_4_deg19.267
r_dihedral_angle_3_deg18.4
r_dihedral_angle_1_deg6.51
r_scangle_it3.056
r_scbond_it2.016
r_angle_refined_deg1.521
r_mcangle_it1.302
r_mcbond_it1.113
r_angle_other_deg0.984
r_symmetry_vdw_other0.262
r_symmetry_vdw_refined0.226
r_nbd_refined0.221
r_nbd_other0.193
r_xyhbond_nbd_refined0.181
r_symmetry_hbond_refined0.171
r_nbtor_refined0.17
r_mcbond_other0.141
r_nbtor_other0.09
r_chiral_restr0.087
r_bond_refined_d0.015
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4489
Nucleic Acid Atoms
Solvent Atoms97
Heterogen Atoms56

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection