2RBD

CRYSTAL STRUCTURE OF A PUTATIVE SPORE COAT PROTEIN (BH2358) FROM BACILLUS HALODURANS C-125 AT 1.54 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.1277NANODROP, 0.2M Li3 Citrate, 20.0% PEG 3350, No Buffer pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4649.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.082α = 90
b = 74.345β = 90
c = 235.812γ = 90
Symmetry
Space GroupI 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat mirror (vertical focusing)2007-07-26MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.91837, 0.97898, 0.97922SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5439.8091000.0750.0759.36.156674
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.541.6299.90.680.681.16.18162

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.5439.80956673288299.930.160.1590.188RANDOM15.56
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.270.91-1.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.293
r_dihedral_angle_4_deg14.384
r_dihedral_angle_3_deg13.705
r_scangle_it7.046
r_scbond_it4.819
r_dihedral_angle_1_deg4.754
r_mcangle_it2.866
r_mcbond_it2.251
r_angle_refined_deg1.452
r_angle_other_deg0.954
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.293
r_dihedral_angle_4_deg14.384
r_dihedral_angle_3_deg13.705
r_scangle_it7.046
r_scbond_it4.819
r_dihedral_angle_1_deg4.754
r_mcangle_it2.866
r_mcbond_it2.251
r_angle_refined_deg1.452
r_angle_other_deg0.954
r_mcbond_other0.612
r_symmetry_vdw_other0.265
r_symmetry_vdw_refined0.234
r_nbd_refined0.221
r_nbtor_refined0.185
r_nbd_other0.183
r_xyhbond_nbd_refined0.17
r_symmetry_hbond_refined0.134
r_nbtor_other0.091
r_chiral_restr0.09
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2430
Nucleic Acid Atoms
Solvent Atoms429
Heterogen Atoms39

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SHELXphasing
MolProbitymodel building
XSCALEdata scaling
PDB_EXTRACTdata extraction
MAR345data collection
XDSdata reduction
SHELXDphasing
SHARPphasing