Experiment: 2R9L

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	285	20%(w/v)PEG 3350, 0.2 M Ammonium chloride, 10mM MnCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K

Crystal Properties
Matthews coefficient	Solvent content
2.58	52.27

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 48.531	α = 90
b = 111.788	β = 90
c = 139.542	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 210		2006-09-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE BM16	0.98400	ESRF	BM16

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	30	96.8	0.063	9.1	6.8		29540

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	2.49	98.1		0.391		6.5	2938

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB entry 2IRU	2.4	21.124	29486	1502	96.78	0.229	0.227	0.272	RANDOM	90.14

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.77			-7.02		2.25

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.146
r_dihedral_angle_4_deg	15.472
r_dihedral_angle_3_deg	14.56
r_dihedral_angle_1_deg	5.572
r_scangle_it	2.173
r_scbond_it	1.576
r_mcangle_it	1.048
r_angle_refined_deg	1.015
r_mcbond_it	0.681
r_symmetry_hbond_refined	0.472

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.146
r_dihedral_angle_4_deg	15.472
r_dihedral_angle_3_deg	14.56
r_dihedral_angle_1_deg	5.572
r_scangle_it	2.173
r_scbond_it	1.576
r_mcangle_it	1.048
r_angle_refined_deg	1.015
r_mcbond_it	0.681
r_symmetry_hbond_refined	0.472
r_nbtor_refined	0.322
r_symmetry_vdw_refined	0.223
r_nbd_refined	0.22
r_xyhbond_nbd_refined	0.213
r_chiral_restr	0.061
r_bond_refined_d	0.007
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4348
Nucleic Acid Atoms	693
Solvent Atoms	97
Heterogen Atoms	31

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.