X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.629324% PEG 5000 MME, 6% (v/v) glycerol, 0.4 M NaCl, 0.16 M (NH4)2SO4, 0.08 M Na Acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.31765746.929165

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.081α = 90
b = 106.081β = 90
c = 70.351γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-11-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.000APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32099.80.05716.56.99831298154-3-315.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.31.351000.4446.49705

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.3209687696876482998.480.1670.1670.1660.182RANDOM15.626
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.270.27-0.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.849
r_dihedral_angle_4_deg19.358
r_dihedral_angle_3_deg11.934
r_dihedral_angle_1_deg6.161
r_scangle_it2.582
r_scbond_it1.775
r_angle_refined_deg1.456
r_mcangle_it1.251
r_angle_other_deg0.827
r_mcbond_it0.738
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.849
r_dihedral_angle_4_deg19.358
r_dihedral_angle_3_deg11.934
r_dihedral_angle_1_deg6.161
r_scangle_it2.582
r_scbond_it1.775
r_angle_refined_deg1.456
r_mcangle_it1.251
r_angle_other_deg0.827
r_mcbond_it0.738
r_symmetry_vdw_other0.249
r_symmetry_vdw_refined0.239
r_nbd_refined0.217
r_symmetry_hbond_refined0.214
r_mcbond_other0.214
r_xyhbond_nbd_refined0.194
r_nbd_other0.192
r_nbtor_refined0.184
r_chiral_restr0.095
r_nbtor_other0.082
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2773
Nucleic Acid Atoms
Solvent Atoms364
Heterogen Atoms21

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection