2R0H

Fungal lectin CGL3 in complex with chitotriose (chitotetraose)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62910.1M sodium citrate, 0.9M lithium sulfate, 0.5M ammonium sulfate, pH5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.1242.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.9α = 73
b = 59.7β = 90.7
c = 60.2γ = 76.4
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2006-09-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.966SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.73082.50.0570.06411.592.56800556130322.579
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.849.90.1710.1767.321.35343

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1ULD1.914.924326143261232593.80.197910.194820.25374RANDOM23.311
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg20.748
r_scangle_it15.962
r_scbond_it12.995
r_mcangle_it7.886
r_mcbond_it7.078
r_dihedral_angle_3_deg5.965
r_dihedral_angle_4_deg5.841
r_angle_refined_deg2.133
r_dihedral_angle_1_deg1.371
r_nbtor_refined0.341
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg20.748
r_scangle_it15.962
r_scbond_it12.995
r_mcangle_it7.886
r_mcbond_it7.078
r_dihedral_angle_3_deg5.965
r_dihedral_angle_4_deg5.841
r_angle_refined_deg2.133
r_dihedral_angle_1_deg1.371
r_nbtor_refined0.341
r_symmetry_vdw_refined0.277
r_nbd_refined0.27
r_chiral_restr0.267
r_symmetry_hbond_refined0.246
r_xyhbond_nbd_refined0.215
r_bond_refined_d0.013
r_gen_planes_refined0.012
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5129
Nucleic Acid Atoms
Solvent Atoms316
Heterogen Atoms172

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing