2QU0

Crystal structure determination of sheep methemoglobin at 2.7 Angstrom resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729320% PEG 3350, Unbuffered condition, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2545.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.231α = 90
b = 70.695β = 90
c = 131.479γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMAR scanner 345 mm plateNIL2006-08-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.73095.70.13513.93.11546015460
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.8973.051538

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1G082.714.891381413814153796.520.2010.195170.25441RANDOM40.255
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.02-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.935
r_dihedral_angle_3_deg20.808
r_dihedral_angle_4_deg17.402
r_dihedral_angle_1_deg6.097
r_scangle_it2.568
r_scbond_it1.761
r_angle_refined_deg1.485
r_mcangle_it1.198
r_mcbond_it0.855
r_nbtor_refined0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.935
r_dihedral_angle_3_deg20.808
r_dihedral_angle_4_deg17.402
r_dihedral_angle_1_deg6.097
r_scangle_it2.568
r_scbond_it1.761
r_angle_refined_deg1.485
r_mcangle_it1.198
r_mcbond_it0.855
r_nbtor_refined0.31
r_nbd_refined0.246
r_symmetry_vdw_refined0.225
r_xyhbond_nbd_refined0.157
r_chiral_restr0.107
r_metal_ion_refined0.083
r_symmetry_hbond_refined0.076
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4394
Nucleic Acid Atoms
Solvent Atoms27
Heterogen Atoms172

Software

Software
Software NamePurpose
REFMACrefinement
AUTOMARdata reduction
AMoREphasing