X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729328% PEG400, 0.1M Tris-HCl, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4750.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.133α = 90
b = 55.617β = 98.97
c = 66.124γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2006-10-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.9793APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.45099.90.07713.823.751057
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.4599.60.4543.593.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2G8C1.4204822948229259399.660.170720.168810.20681RANDOM14.426
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.44-0.190.13-0.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.021
r_dihedral_angle_3_deg10.2
r_dihedral_angle_4_deg8.817
r_dihedral_angle_1_deg5.839
r_sphericity_free4.547
r_scangle_it3.508
r_sphericity_bonded2.988
r_scbond_it2.61
r_mcangle_it1.667
r_mcbond_it1.367
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.021
r_dihedral_angle_3_deg10.2
r_dihedral_angle_4_deg8.817
r_dihedral_angle_1_deg5.839
r_sphericity_free4.547
r_scangle_it3.508
r_sphericity_bonded2.988
r_scbond_it2.61
r_mcangle_it1.667
r_mcbond_it1.367
r_rigid_bond_restr1.334
r_angle_refined_deg1.313
r_angle_other_deg0.794
r_mcbond_other0.479
r_symmetry_vdw_refined0.208
r_nbd_refined0.2
r_nbd_other0.189
r_nbtor_refined0.161
r_symmetry_hbond_refined0.155
r_symmetry_vdw_other0.152
r_xyhbond_nbd_refined0.128
r_nbtor_other0.081
r_chiral_restr0.079
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1848
Nucleic Acid Atoms
Solvent Atoms430
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing