2ORU
Solution structure of xtz1-peptide, a beta-hairpin peptide with a structured extension
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 2 mM xtz1-peptide; 90% H2O, 10% D2O, pH 6, 0.010 ml of 0.1% DSS | 90% H2O/10% D2O | 2 mM peptide | 6 | AMBIENT | 288 | |
2 | DQF-COSY | 2 mM xtz1-peptide; 90% H2O, 10% D2O, pH 6, 0.010 ml of 0.1% DSS | 90% H2O/10% D2O | 2 mM peptide | 6 | AMBIENT | 288 | |
3 | 2D NOESY | 2 mM xtz1-peptide; 90% H2O, 10% D2O, pH 6, 0.010 ml of 0.1% DSS | 90% H2O/10% D2O | 2 mM peptide | 6 | AMBIENT | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
Simulated annealing and TORSION ANGLE DYNAMICS | Chemical shift assignments were manually done. Automated NOESY assignment and structure ensemble calculation was performed with CYANA v.2.1. A total of 431 unassigned NOESY peaks with intensity greater than ~1% of the most intense NOESY peak were input to CYANA. CYANA assigned 403 of 431 (93.5%) peaks, of which 309 were used as distance constraints in the structure calculation. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1c | |
2 | processing | NMRView | 6.4 | Johnson |
3 | structure solution | CYANA | 2.1 | Guentert |
4 | refinement | CYANA | 2.1 | Guentert |