2ORU

Solution structure of xtz1-peptide, a beta-hairpin peptide with a structured extension


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D TOCSY2 mM xtz1-peptide; 90% H2O, 10% D2O, pH 6, 0.010 ml of 0.1% DSS90% H2O/10% D2O2 mM peptide6AMBIENT288
2DQF-COSY2 mM xtz1-peptide; 90% H2O, 10% D2O, pH 6, 0.010 ml of 0.1% DSS90% H2O/10% D2O2 mM peptide6AMBIENT288
32D NOESY2 mM xtz1-peptide; 90% H2O, 10% D2O, pH 6, 0.010 ml of 0.1% DSS90% H2O/10% D2O2 mM peptide6AMBIENT288
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
Simulated annealing and TORSION ANGLE DYNAMICSChemical shift assignments were manually done. Automated NOESY assignment and structure ensemble calculation was performed with CYANA v.2.1. A total of 431 unassigned NOESY peaks with intensity greater than ~1% of the most intense NOESY peak were input to CYANA. CYANA assigned 403 of 431 (93.5%) peaks, of which 309 were used as distance constraints in the structure calculation.VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1c
2processingNMRView6.4Johnson
3structure solutionCYANA2.1Guentert
4refinementCYANA2.1Guentert