X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.4529338% PEG400, and 100mM Imidazole, pH 6.45, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1943.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.356α = 90
b = 53.226β = 98.83
c = 65.195γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2006-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.97934APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85099.80.06427.43420849
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.8699.50.3354.173.62047

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2G8C1.920169871698789899.830.234430.234430.231720.28612RANDOM33.37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.181.872.5-4.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.493
r_dihedral_angle_3_deg18.108
r_dihedral_angle_4_deg10.128
r_dihedral_angle_1_deg7.111
r_scangle_it3.838
r_scbond_it2.602
r_angle_refined_deg1.67
r_mcangle_it1.494
r_mcbond_it1.478
r_angle_other_deg0.819
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.493
r_dihedral_angle_3_deg18.108
r_dihedral_angle_4_deg10.128
r_dihedral_angle_1_deg7.111
r_scangle_it3.838
r_scbond_it2.602
r_angle_refined_deg1.67
r_mcangle_it1.494
r_mcbond_it1.478
r_angle_other_deg0.819
r_symmetry_vdw_other0.253
r_mcbond_other0.241
r_symmetry_hbond_refined0.231
r_nbd_other0.206
r_nbd_refined0.189
r_nbtor_refined0.173
r_xyhbond_nbd_refined0.167
r_symmetry_vdw_refined0.155
r_chiral_restr0.094
r_nbtor_other0.094
r_xyhbond_nbd_other0.036
r_bond_refined_d0.018
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1795
Nucleic Acid Atoms
Solvent Atoms50
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing