X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529320% PEG3350, 6% isopropanol, 200mM NaCl, and 100 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4149.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.127α = 85.68
b = 55.333β = 74.05
c = 64.789γ = 86.45
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-12-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.355095.60.06918.873.4103051
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.351.493.10.3244.343.410015

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2G8C1.35209787097870513995.220.18540.18540.183670.21819RANDOM15.287
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.910.22-0.18-0.31-0.2-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.637
r_dihedral_angle_4_deg20.9
r_dihedral_angle_3_deg11.997
r_sphericity_free7.202
r_dihedral_angle_1_deg7.118
r_scangle_it4.414
r_scbond_it3.469
r_sphericity_bonded2.475
r_mcangle_it2.168
r_rigid_bond_restr2.142
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.637
r_dihedral_angle_4_deg20.9
r_dihedral_angle_3_deg11.997
r_sphericity_free7.202
r_dihedral_angle_1_deg7.118
r_scangle_it4.414
r_scbond_it3.469
r_sphericity_bonded2.475
r_mcangle_it2.168
r_rigid_bond_restr2.142
r_mcbond_it2.043
r_angle_refined_deg1.479
r_angle_other_deg0.749
r_mcbond_other0.678
r_symmetry_vdw_other0.245
r_nbd_refined0.227
r_symmetry_vdw_refined0.227
r_nbd_other0.2
r_symmetry_hbond_refined0.176
r_nbtor_refined0.159
r_xyhbond_nbd_refined0.158
r_chiral_restr0.09
r_nbtor_other0.083
r_bond_refined_d0.013
r_bond_other_d0.005
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3767
Nucleic Acid Atoms
Solvent Atoms568
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing