2OF7

Structural Genomics, the crystal structure of a tetR-family transcriptional regulator from Streptomyces coelicolor A3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52930.2M NH4(OAC), 25% PEG3350, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1542.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.101α = 90
b = 73.24β = 107.27
c = 48.082γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirror2006-08-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97902APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.336.6198.80.0728.54.6109631096341.07
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3691.60.2823.33.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.336.61104121041252698.580.233890.230920.2927RANDOM48.57
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.10.050.09-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.957
r_dihedral_angle_3_deg24.955
r_dihedral_angle_4_deg22.788
r_dihedral_angle_1_deg10.183
r_scangle_it4.847
r_scbond_it3.43
r_angle_refined_deg2.616
r_mcangle_it2.235
r_mcbond_it1.441
r_symmetry_vdw_refined0.344
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.957
r_dihedral_angle_3_deg24.955
r_dihedral_angle_4_deg22.788
r_dihedral_angle_1_deg10.183
r_scangle_it4.847
r_scbond_it3.43
r_angle_refined_deg2.616
r_mcangle_it2.235
r_mcbond_it1.441
r_symmetry_vdw_refined0.344
r_nbtor_refined0.316
r_nbd_refined0.283
r_xyhbond_nbd_refined0.255
r_chiral_restr0.181
r_symmetry_hbond_refined0.176
r_bond_refined_d0.025
r_gen_planes_refined0.009
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1489
Nucleic Acid Atoms
Solvent Atoms53
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing